Latest updates for Splicing And Junction Mapping

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Recent items include:

  • MitoClipSplice – machine learning improves RNA sequencing analysis of mitochondrial RNA processing
  • NextLongIso – a comprehensive Nextflow pipeline for multi-dimensional long-read RNA-seq analysis
  • Ultrafast and reference-free sequence discovery in single-cell data

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rna-seqblog.com /3 weeks ago

MitoClipSplice – machine learning improves RNA sequencing analysis of mitochondrial RNA processing

RNA sequencing combined with machine learning identifies mitochondrial RNA cleavage sites from soft-clipped reads, providing a new approach for investigating mitochondrial RNA...

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rna-seqblog.com /4 weeks ago

NextLongIso – a comprehensive Nextflow pipeline for multi-dimensional long-read RNA-seq analysis

NextLongIso provides a unified RNA sequencing pipeline for analyzing transcript isoforms, alternative splicing, promoter usage, and...

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rna-seqblog.com /1 week ago

Ultrafast and reference-free sequence discovery in single-cell data

Malva enables ultrafast, reference-free searches across massive single-cell RNA sequencing datasets for mutations, splice junctions, pathogens, transcripts, and other sequence-leve...

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rna-seqblog.com /1 month ago

Benchmarking long-read RNA sequencing tools for single-cell and spatial transcriptomics

RNA sequencing benchmark compares long-read bioinformatics tools for single-cell and spatial transcriptomics, helping researchers improve isoform detection and gene...

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rna-seqblog.com /2 weeks ago

A functionally integrated cross-tissue alternative splicing program during short-term calorie restriction

RNA sequencing reveals that calorie restriction drives dose-responsive alternative splicing across multiple tissues, affecting mitochondrial, translational, and RNA quality-control...

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rna-seqblog.com /1 month ago

ISAtools improves full-length RNA isoform analysis from long-read RNA sequencing

RNA sequencing with ISAtools enables accurate reconstruction and quantification of full-length RNA isoforms while efficiently processing large PacBio sequencing datasets...

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rna-seqblog.com /3 weeks ago

Tidesurf improves RNA velocity analysis for modern single-cell RNA sequencing

Tidesurf improves RNA sequencing analysis by accurately quantifying spliced and unspliced transcripts across 3' and 5' protocols for more reliable RNA velocity estimates...

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rna-seqblog.com /1 week ago

Spatial mapping of RNA turnover kinetics in the mouse brain

Spatial RNA sequencing maps RNA synthesis and degradation across the mouse brain, revealing how different regions rapidly adjust gene expression in response to stimulation...

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rna-seqblog.com /1 month ago

Spatial transcriptomics benchmark compares leading platforms

RNA sequencing and spatial transcriptomics were combined to benchmark leading platforms, helping researchers compare how accurately each maps gene activity within complex tissues.....

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journals.plos.org /1 week ago

ASPIRE: Accurate alternative splicing prediction from limited RNA sequencing data and a minimal gene set

by Ran Eisenberg, Efraim Rahamim, Eli Kopel, Miri Danan-Gotthold, Erez Y. Levanon, Ofir Lindenbaum Alternative splicing is a fundamental biological mechanism that increases protei...

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rna-seqblog.com /2 weeks ago

PotatoRTD and TomatoRTD: comprehensive reference transcript datasets for accurate transcriptome analysis and isoform dis...

RNA sequencing and Iso-Seq improve potato and tomato transcript annotations, revealing additional isoforms and enabling more accurate analysis of gene expression and alternative sp...

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rna-seqblog.com /1 month ago

Spatial RNA sequencing maps how T cells recognize tumors

RNA sequencing combined with spatial genotyping mapped where neoantigen-specific T cells interact with tumor cells, revealing organized immune niches that may guide personalized ca...

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journals.plos.org /1 month ago

Accurate <i>de novo</i> transcription unit annotation from run-on and sequencing data

by Paul R. Munn, Jay Chia, Charles G. Danko Functional element annotations are critical tools used to provide insight into the molecular processes governing cell development, diff...

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Sources covering Splicing And Junction Mapping

journals.plos.org

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rna-seqblog.com

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rna sequencing Publications alternative splicing Single-cell RNA sequencing Spatial transcriptomics bioinformatics transcriptomics Analysis Pipelines Splicing and Junction Mapping Uncategorized gene expression long-read RNA sequencing

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