Latest updates for Gene Expression Gradients

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Recent items include:

  • Decima predicts gene expression at single-cell resolution
  • The differentiation of myeloid progenitors is effected by cascading waves of coordinated gene expression that remodel ce
  • Decoding the Brain’s Genetic Wiring Map

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Fresh articles and ideas

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rna-seqblog.com /2 days ago

Decima predicts gene expression at single-cell resolution

RNA sequencing from more than 22 million cells trained a model that predicts cell-type-specific gene expression and noncoding variant...

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journals.plos.org /2 weeks ago

The differentiation of myeloid progenitors is effected by cascading waves of coordinated gene expression that remodel ce...

by Andrea Repele, Joanna Handzlik, Nimasha Samarawickrama, Trevor Long, Sunil Nooti, Veena Potluri, Yen Lee Loh, Manu The differentiation of hematopoietic progenitors into special...

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neurosciencenews.com /2 weeks ago

Decoding the Brain’s Genetic Wiring Map

The study identified "gene expression gradients", overlapping chemical signals that give every brain region a unique molecular ID.

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genengnews.com /3 weeks ago

Gene Syntax Determines DNA Supercoiling and Modulates Gene Expression

Researchers show that gene syntax reshapes DNA supercoiling, amplifying or suppressing neighboring genes. The work uncovers a design rule that could improve the precision and behav...

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journals.plos.org /1 month ago

Unveiling gene perturbation effects through gene regulatory networks inference from single-cell transcriptomic data

by Clelia Corridori, Merrit Romeike, Giorgio Nicoletti, Christa Buecker, Samir Suweis, Sandro Azaele, Graziano Martello Physiological and pathological processes are governed by ne...

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rna-seqblog.com /1 month ago

Single-cell total RNA sequencing expands our view of gene regulation

RNA sequencing captures both coding and noncoding RNAs at single-cell resolution, revealing complex regulatory programs and cellular identities across development and disease...

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rna-seqblog.com /1 month ago

The history of spatial transcriptomics at Sanger

At the Wellcome Sanger Institute, advances in spatial transcriptomics and RNA sequencing enable detailed mapping of gene expression and cellular interactions within complex tissues...

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bioengineer.org /1 month ago

Gene Expression in Cord Blood: Toward Artificial Placenta

In a groundbreaking revelation poised to reshape our understanding of fetal development, recent research has illuminated a perplexing biphasic oxygenation pattern during mid-gestat...

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journals.plos.org /1 month ago

Predictive modeling of gene expression and localization of DNA binding site using deep convolutional neural networks

by Arman Karshenas, Tom Röschinger, Hernan G. Garcia Despite the sequencing revolution, large swaths of the genomes sequenced to date lack any information about the arrangement of...

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journals.plos.org /2 days ago

UNified FramewOrk for reguLatory Dynamics (UNFOLD): Dissecting robustness, plasticity, evolvability and canalisation of...

by Debomita Chakraborty, Raghunathan Rengaswamy, Karthik Raman A unique balance of seemingly contradictory properties like robustness and plasticity, or evolvability and functiona...

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rna-seqblog.com /4 weeks ago

PSGRN: Gene regulatory network inference from single-cell perturbational data through self-training with synthetic gold...

RNA sequencing combined with perturbation data enables PSGRN to improve gene regulatory network inference, enhancing accuracy in identifying gene interactions across single-cell...

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rna-seqblog.com /1 month ago

SPTEdU-seq – parallel optics-free newborn cell tracking and spatial total transcriptional dynamics

RNA sequencing combined with spatial profiling tracks gene expression and cell proliferation, revealing dynamic cellular interactions and uncovering new insights into development.....

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journals.plos.org /1 month ago

System drift in the evolution of plant meristem development

by Pjotr L. van der Jagt, Steven Oud, Renske M. A. Vroomans Developmental system drift (DSD) is a process where a phenotypic trait is conserved over evolutionary time, while the g...

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rna-seqblog.com /1 month ago

RNA sequencing reveals dynamic Sox9 regulation during cartilage development

RNA sequencing reveals how Sox9 dynamically regulates gene expression during cartilage development, highlighting distinct cell populations and shifting genetic programs...

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journals.plos.org /1 month ago

Lactate and histone H3K18 lactylation are associated with metabolic control of gene expression in the retina

by Mohita Gaur, Matthew J. Brooks, Xulong Liang, Ke Jiang, Anjani Kumari, Milton A. English, Paolo Cifani, Maria C. Panepinto, Jacob Nellissery, Robert N. Fariss, Laura Campello, C...

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rna-seqblog.com /1 month ago

RNA sequencing moves toward absolute measurement of gene expression

RNA sequencing calibration using standardized references enables absolute quantification of gene expression, improving cross-study comparisons and reducing bias across experiments...

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phys.org /2 weeks ago

The G-value paradox: Why similar genes can lead to very different brains

Biologists have long puzzled over why organisms with similar numbers of protein-coding genes can differ so dramatically in nervous system complexity. New research points to a poten...

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scitechdaily.com /2 weeks ago

This Weird Sea Creature May Have Rewritten Life’s Genetic Rulebook

Long-distance gene control first emerged around 650 to 700 million years ago, significantly earlier than scientists had previously believed. Life depends on timing. Every cell must...

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lifespan.io /2 days ago

A Better Algorithm for Predicting How Cells Behave

In a preprint published in arXiv, researchers from Altos Labs have described a machine learning algorithm that performs end-to-end prediction of how cells’ gene expression will res...

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rna-seqblog.com /1 month ago

Sex differences in human brain gene expression may shape disease risk

RNA sequencing reveals subtle sex-linked differences in brain gene expression across cell types, offering insight into neurological and psychiatric disease risk and progression...

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journals.plos.org /1 month ago

The geometry of <i>G</i> × <i>E</i>: How scaling and endogenous treatment effects shape interact...

by Michal Sadowski, Andy W. Dahl, Noah Zaitlen, Richard Border Gene-environment interaction (G × E) studies hold promise for identifying genetic loci mediating the effects of envi...

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genengnews.com /1 month ago

Spatial Biology

Spatial biology is a rapidly advancing discipline that examines biological molecules (such as DNA, RNA, and proteins) within their native locations in tissues. This approach offers...

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rna-seqblog.com /1 week ago

Transcriptomics in space, an RNA sequencing pipeline for space biology research

RNA sequencing supports space biology research by enabling transcriptome-wide analysis of gene expression changes associated with spaceflight and adaptation to space environments.....

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rna-seqblog.com /3 weeks ago

Non-destructive transcriptomics via vesicular export

RNA sequencing with NTVE enables repeated monitoring of gene expression in living cells, supporting time-course analysis of differentiation, perturbation responses, and cellular dy...

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bioengineer.org

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journals.plos.org

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neurosciencenews.com

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