Latest updates for Pseudotime Analysis

Fresh curated links around pseudotime analysis are collected here so marketers can spot useful updates and turn timely ideas into posts faster.

Recent items include:

  • The Lomb–Scargle periodogram-based differentially expressed gene detection along pseudotime
  • scLS – a computationally efficient differentially expressed gene detection algorithm
  • Bonsai reconstructs tree representations for distortion-free visualization and exploration of high-dimensional data

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rna-seqblog.com /1 month ago

The Lomb–Scargle periodogram-based differentially expressed gene detection along pseudotime

RNA sequencing combined with a new computational method improved detection of genes that change during cellular transitions, helping researchers better understand...

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rna-seqblog.com /1 week ago

scLS – a computationally efficient differentially expressed gene detection algorithm

A new RNA sequencing analysis method uses the Lomb-Scargle periodogram to efficiently identify genes associated with pseudotime across complex single-cell trajectories...

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rna-seqblog.com /2 weeks ago

Bonsai reconstructs tree representations for distortion-free visualization and exploration of high-dimensional data

Bonsai uses tree-based visualization to preserve relationships within high-dimensional RNA sequencing data, helping researchers explore cell populations, developmental pathways, an...

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journals.plos.org /2 weeks ago

Dynamic Landscape Analysis of cell fate decisions provides predictive models of neural development from single-cell data

by Marine Fontaine, M. Joaquina Delás, Meritxell Sáez, Rory J. Maizels, Elizabeth Finnie, James Briscoe, David A. Rand Building a mechanistic understanding of cell fate decisions...

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rna-seqblog.com /3 weeks ago

Tidesurf improves RNA velocity analysis for modern single-cell RNA sequencing

Tidesurf improves RNA sequencing analysis by accurately quantifying spliced and unspliced transcripts across 3' and 5' protocols for more reliable RNA velocity estimates...

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lifespan.io /1 month ago

A New Transcriptomic Clock for Intervention Analysis

A team of researchers has developed Pasta, a transcriptomic clock that accurately predicts the age-related effects of various compounds and gene expressions. Epigenetics versus tra...

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journals.plos.org /1 month ago

Uncertainty-aware quantitative analysis of high-throughput live cell migration data

by Simo Kitanovski, Shannon Conroy, Justin Sonneck, Lukas Claas, Madeleine Dorsch, Sebastian Urban, Jianxu Chen, Markus Kaiser, Barbara M. Grüner, Daniel Hoffmann Cell migration i...

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journals.plos.org /1 month ago

HNPP: Higher-order network-based personalized PageRank for detecting critical phase in complex biological systems

by Jiayuan Zhong, Xuerong Gu, Dandan Ding, Qiao Wei, Bowen Niu, Ting Tao, Pei Chen, Rui Liu Dynamic biological processes often undergo a critical transition, where the system shif...

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journals.plos.org /6 days ago

Balanced DNA interpolation improves learning of genetic distance-informed embeddings in plants

by Lara M. Kösters, Kevin Karbstein, Ladislav Hodač, Laura Albreht, Elvira Sahuquillo Balbuena, Daniel Botello, Olivier Hardy, Phebian Odufuwa, Eva Pardo Otero, Aireen Phang, Manue...

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journals.plos.org /4 weeks ago

SKIM: A fast sketching strategy integrated with model’s dynamic-feedback for large-scale single-cell transcriptomic anal...

by Jiaxing Bai, Feng Zhou, Chongyang Tan, Yichun Gao, Yushuang He, Xiaobing Huang, Ying Wang The rapid expansion of single-cell RNA sequencing (scRNA-seq) datasets poses analytica...

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journals.plos.org /1 month ago

A fast numerical integration scheme for clonal expansion processes on graphs

by Chay Paterson, Miaomiao Gao, Joshua Hellier, Georg Luebeck, David C. Wedge, Ivana Bozic Compound birth-death processes are widely used to model the age-incidence curves of many...

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Sources covering Pseudotime Analysis

journals.plos.org

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journals.plos.org

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lifespan.io

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rna-seqblog.com

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Publications bioinformatics Expression and Quantification Single-cell RNA sequencing Statistical Analysis differential gene expression pseudotime analysis 10X Genomics Bonsai Clock Computational Biology Data Visualization

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