Latest updates for Differential Expression

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Recent items include:

  • The Lomb–Scargle periodogram-based differentially expressed gene detection along pseudotime
  • scLS – a computationally efficient differentially expressed gene detection algorithm
  • A Bayesian framework for multivariate differential analysis

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rna-seqblog.com /1 month ago

The Lomb–Scargle periodogram-based differentially expressed gene detection along pseudotime

RNA sequencing combined with a new computational method improved detection of genes that change during cellular transitions, helping researchers better understand...

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rna-seqblog.com /1 week ago

scLS – a computationally efficient differentially expressed gene detection algorithm

A new RNA sequencing analysis method uses the Lomb-Scargle periodogram to efficiently identify genes associated with pseudotime across complex single-cell trajectories...

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journals.plos.org /1 week ago

A Bayesian framework for multivariate differential analysis

by Marie Chion, Arthur Leroy Differential analysis is a routine procedure in the statistical analysis toolbox across many applied fields, including quantitative proteomics, the ma...

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journals.plos.org /1 day ago

Not every gene is special: Modelling scale controls the false discovery rate when analysing high-throughput sequencing d...

by Scott J. Dos Santos, Andreea C. Murariu, Justin D. Silverman, Gregory B. Gloor Differential expression/abundance analyses are commonplace in studies employing high-throughput s...

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rna-seqblog.com /2 weeks ago

A functionally integrated cross-tissue alternative splicing program during short-term calorie restriction

RNA sequencing reveals that calorie restriction drives dose-responsive alternative splicing across multiple tissues, affecting mitochondrial, translational, and RNA quality-control...

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journals.plos.org /1 month ago

Assessing scale and predictive diversity in models for single-cell transcriptomics based on Geneformer

by Junfan Chen, Fabian Schmidt, Ricardo Henao Single-cell transcriptomic data provide critical insights into cellular states and disease mechanisms, and foundation models have rec...

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rna-seqblog.com /1 month ago

DeepDETAILS – high-resolution reconstruction of cell-type-specific transcriptional regulatory processes from bulk sequen...

DeepDETAILS combines artificial intelligence with RNA sequencing and chromatin data to reconstruct cell-specific gene regulation from bulk tissue sequencing experiments...

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Sources covering Differential Expression

journals.plos.org

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rna-seqblog.com

Recent coverage from public sources
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Publications Expression and Quantification Statistical Analysis bioinformatics differential gene expression gene expression pseudotime analysis rna sequencing Cell Type Analysis Commentary Computational Biology Lomb-Scargle periodogram

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