Latest updates for Differential Expression

Fresh curated links around differential expression are collected here so marketers can spot useful updates and turn timely ideas into posts faster.

Recent items include:

  • scLS – a computationally efficient differentially expressed gene detection algorithm
  • A real-data approach to evaluating RNA transcript analysis methods
  • A Bayesian framework for multivariate differential analysis

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rna-seqblog.com /1 month ago

scLS – a computationally efficient differentially expressed gene detection algorithm

A new RNA sequencing analysis method uses the Lomb-Scargle periodogram to efficiently identify genes associated with pseudotime across complex single-cell trajectories...

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rna-seqblog.com /1 month ago

A real-data approach to evaluating RNA transcript analysis methods

RNA sequencing data provide a real-world framework for comparing differential transcript usage methods across bulk, single-cell, spatial, long-read, and short-read transcriptomics....

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journals.plos.org /1 month ago

A Bayesian framework for multivariate differential analysis

by Marie Chion, Arthur Leroy Differential analysis is a routine procedure in the statistical analysis toolbox across many applied fields, including quantitative proteomics, the ma...

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journals.plos.org /1 month ago

Not every gene is special: Modelling scale controls the false discovery rate when analysing high-throughput sequencing d...

by Scott J. Dos Santos, Andreea C. Murariu, Justin D. Silverman, Gregory B. Gloor Differential expression/abundance analyses are commonplace in studies employing high-throughput s...

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journals.plos.org /1 month ago

Developmental and tissue expression breadth define distinct but overlapping classes of housekeeping genes

by Alicia Lou, Juan F. Poyatos, Monica Chagoyen Housekeeping genes are commonly defined as broadly expressed genes that support essential cellular function. However, their identif...

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journals.plos.org /1 month ago

Bacterial chromosomal gene positioning is likely shaped by selection on both mean and growth-dependent expression

by Ruiqi Yuan, Jianzhi Zhang In bacteria with circular chromosomes, genes near the replication origin (oriC) are replicated earlier and consequently attain higher copy numbers tha...

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rna-seqblog.com /1 month ago

Autism-risk mutations reveal two opposing patterns of brain gene activity

RNA sequencing reveals two opposing patterns of brain gene activity across genetically diverse autism-risk mouse models, with differences...

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bioengineer.org /2 days ago

Willow HMG genes show sex-associated expression across three flower types

RNA sequencing and expression assays in the ‘J795’ willow identified 19 HMG genes, including the male-flower-highest HMG18, as candidates for research on sex differentiation.

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rna-seqblog.com /1 month ago

A functionally integrated cross-tissue alternative splicing program during short-term calorie restriction

RNA sequencing reveals that calorie restriction drives dose-responsive alternative splicing across multiple tissues, affecting mitochondrial, translational, and RNA quality-control...

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Sources covering Differential Expression

bioengineer.org

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journals.plos.org

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journals.plos.org

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rna-seqblog.com

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