Latest updates for Spatial Transcriptomics

Fresh curated links around Spatial transcriptomics are collected here so marketers can spot useful updates and turn timely ideas into posts faster.

Recent items include:

  • Transcriptomics in space, an RNA sequencing pipeline for space biology research
  • CIPHER: An end-to-end framework for designing optimized aggregated spatial transcriptomics experiments
  • StPedf: Cell trajectory inference of spatial transcriptomics via spatial proximity embedding and spatial density-adaptiv

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rna-seqblog.com /1 month ago

Transcriptomics in space, an RNA sequencing pipeline for space biology research

RNA sequencing supports space biology research by enabling transcriptome-wide analysis of gene expression changes associated with spaceflight and adaptation to space environments.....

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journals.plos.org /1 month ago

CIPHER: An end-to-end framework for designing optimized aggregated spatial transcriptomics experiments

by Zachary Hemminger, Haley De Ocampo, Fangming Xie, Zhiqian Zhai, Jingyi Jessica Li, Roy Wollman Motivation Most imaging-based spatial transcriptomics methods measure individual g...

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journals.plos.org /1 month ago

StPedf: Cell trajectory inference of spatial transcriptomics via spatial proximity embedding and spatial density-adaptiv...

by Yuan Zhang, Ziyan Sun, Zhixin Shi, Mengdi Nan, Yuhan Fu, Qing Ren, Jie Gao Spatial transcriptomics is transforming our multidimensional understanding of cellular spatial organi...

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rna-seqblog.com /1 month ago

Study is first demonstration of gene transcription measurement in the living brain

A new blood-test platform enables noninvasive monitoring of gene expression in living tissues over time, complementing RNA sequencing approaches for studying disease progression......

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rna-seqblog.com /1 week ago

Nanopore direct RNA sequencing expands the view of the transcriptome

RNA sequencing using nanopore direct RNA sequencing enables simultaneous analysis of native RNA molecules, transcript isoforms, RNA modifications, and poly(A) tails for comprehensi...

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rna-seqblog.com /1 month ago

New eBook | RNA-seq: A peek inside the transcriptome

This collection highlights how RNA sequencing is advancing transcriptomics research, from single-cell analysis and disease mechanisms to nanopore sequencing and AI-driven data inte...

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journals.plos.org /1 month ago

Histology-informed spatial domain identification through multi-view graph convolutional networks

by Huihui Zhang, Jiaxing Chang, Zirong Li, Yue Sun, Pinli Hu, Haoxiu Wang, Hang Yang, Yonglin Ren, Xingtan Zhang, Zehua Chen, Kok Wai Wong, Haojing Shao Identifying spatial domain...

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rna-seqblog.com /1 month ago

Perturb-DBiT – mapping cancer biology with spatial CRISPR screening and RNA sequencing

New spatial RNA sequencing technology links large-scale CRISPR perturbations to tumor growth, metastasis, immune responses, and complex RNA regulation within intact tissues... The...

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rna-seqblog.com /1 month ago

TAP-seq – targeted single-cell RNA and perturbation sequencing

TAP-seq combines genome editing with targeted RNA sequencing to enable sensitive and cost-effective single-cell functional genomics screens...

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rna-seqblog.com /1 month ago

New STAMP technology bridges single-cell genomics and cell morphology to democratize spatial biology analysis

STAMP combines imaging and RNA sequencing to link cell morphology with gene expression, enabling researchers to connect molecular profiles directly to observable cellular... The po...

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rna-seqblog.com /1 month ago

m6A-ARTR-DBiT – mapping RNA modifications across tissues with spatial m6A profiling

Spatial RNA sequencing and m6A profiling reveal how RNA modifications vary across tissues, uncovering region-specific patterns of gene regulation in developing and adult... The pos...

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bioengineer.org /2 weeks ago

Linking Single-Cell Transcriptomes to Mouse Visual Circuits

In a groundbreaking study published in Nature, researchers have unveiled sophisticated predictive models linking the complex architecture of individual neurons in the mouse primary...

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rna-seqblog.com /1 month ago

New genomic approaches uncover surprising cellular dynamics of the aging brain

Advanced RNA sequencing methods, including IRISeq and EnrichSci, uncover spatial interactions and molecular changes linked to aging in vulnerable brain cell populations...

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rna-seqblog.com /2 weeks ago

HistoMap reconstructs single-cell spatial profiles from bulk RNA sequencing

RNA sequencing combined with artificial intelligence reconstructed single-cell spatial organization from bulk data, revealing immune barriers that may influence colorectal cancer.....

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rna-seqblog.com /3 weeks ago

Alithea Genomics launches early access program for MERCURIUSâ„¢ 1536 DRUG-seq, bringing transcriptomics to compound scre...

MERCURIUSâ„¢ 1536 DRUG-seq brings RNA sequencing to large-scale compound screening, enabling efficient gene expression profiling... The post Alithea Genomics launches early access...

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rna-seqblog.com /1 month ago

Decima predicts gene expression at single-cell resolution

RNA sequencing from more than 22 million cells trained a model that predicts cell-type-specific gene expression and noncoding variant...

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rna-seqblog.com /2 days ago

Amaranth – enhanced single-cell transcript assembly via discriminative modelling of UMI reads and internal reads

Amaranth improves transcript reconstruction from RNA sequencing data by modeling different read types, enabling more accurate isoform analysis at single-cell resolution...

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rna-seqblog.com /3 weeks ago

Multisite assessment of methods for cell preservation upstream of single-cell RNA sequencing

RNA sequencing workflows using preserved cells enable flexible sample collection and support reproducible single-cell analyses across multiple laboratories and processing platforms...

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rna-seqblog.com /1 day ago

NanoncRNA-seq – an rRNA-depleted full-length transcriptome strategy for identification of novel lncRNA isoforms

A new RNA sequencing workflow using nanopore technology improves full-length lncRNA isoform discovery, revealing many previously undetected transcripts missed by conventional short...

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rna-seqblog.com /1 month ago

Long-read RNA sequencing reveals how alternative splicing shapes immune responses

Long-read RNA sequencing revealed extensive alternative splicing changes in activated human monocytes, uncovering functional isoforms that enhance immune protein production during...

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rna-seqblog.com /1 month ago

Parse Biosciences and bit.bio Announce Landmark Alliance

This Parse Biosciences and bit.bio alliance combines single-cell RNA sequencing and causal transcriptomics to map transcription factor-driven cell identity, enabling improved disea...

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journals.plos.org /1 month ago

Challenges and progress in RNA velocity: Comparative analysis across multiple biological contexts

by Sarah Ancheta, Leah Dorman, Guillaume Le Treut, Abel Gurung, Greg Huber, Loïc A. Royer, Alejandro Granados, Merlin Lange Single-cell RNA sequencing is revolutionizing our under...

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rna-seqblog.com /2 weeks ago

Why Multidisciplinary Teams Matter in Translational Transcriptomics

RNA sequencing delivers its greatest clinical value when multidisciplinary teams integrate laboratory, computational, and clinical expertise to ensure findings are accurate, interp...

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rna-seqblog.com /1 month ago

CAMP4 Therapeutics preprints pioneering study on regulatory RNA profiling and gene upregulation

RNA sequencing with regRNA Capture-seq identified thousands of regulatory RNAs and enabled new strategies to increase expression of disease-related genes using ASOs...

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Sources covering Spatial Transcriptomics

bioengineer.org

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journals.plos.org

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rna-seqblog.com

Recent coverage from public sources
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Publications rna sequencing transcriptomics Single-cell RNA sequencing Workflow gene expression Spatial Analysis Spatial Transcriptomics bioinformatics Commentary long read sequencing single-cell sequencing

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