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  • A spectral framework for measuring diversity in multiple sequence alignments
  • PanDelos-plus: A parallel algorithm for computing sequence homology in pangenomic analysis

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journals.plos.org /1 month ago

A spectral framework for measuring diversity in multiple sequence alignments

by Vaitea Opuu Machine learning (ML) methods for proteins and RNAs rely on multiple sequence alignments (MSAs) and related datasets such as experimental mutagenesis libraries, yet...

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journals.plos.org /1 month ago

PanDelos-plus: A parallel algorithm for computing sequence homology in pangenomic analysis

by Simone Colli, Emiliano Maresi, Vincenzo Bonnici The identification of homologous gene families across multiple genomes is a central task in bacterial pangenomics traditionally...

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