Latest updates for Snp Calling

Fresh curated links around SNP calling are collected here so marketers can spot useful updates and turn timely ideas into posts faster.

Recent items include:

  • longcallR – SNP calling, haplotype phasing and allele-specific analysis with long RNA-seq reads
  • STARCall integrates image stitching, alignment, and read calling to enable scalable analysis of <i>in situ</i&g
  • Semi-parametric empirical bayes method for multiplet detection in snATAC-seq with probabilistic multi-omic integration

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Fresh articles and ideas

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rna-seqblog.com /1 month ago

longcallR – SNP calling, haplotype phasing and allele-specific analysis with long RNA-seq reads

RNA sequencing with long-read technology links genetic variants to transcript structure, uncovering allele-specific splicing and previously unannotated RNA events across human samp...

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journals.plos.org /1 month ago

STARCall integrates image stitching, alignment, and read calling to enable scalable analysis of &lt;i&gt;in situ&lt;/i&g...

by Nicholas J. Bradley, Sriram Pendyala, Katie Partington, Douglas M. Fowler Fluorescent in situ sequencing involves imaging-based sequencing by synthesis in intact cells or tissu...

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journals.plos.org /1 month ago

Semi-parametric empirical bayes method for multiplet detection in snATAC-seq with probabilistic multi-omic integration

by Yuntian Wu, Haoran Hu, Wei Chen, Johann E. Gudjonsson, Lam C. Tsoi, Xiaoquan Wen Multiplets arise when multiple cells are captured within the same droplet during single-cell se...

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rna-seqblog.com /1 month ago

Children’s Hospital of Philadelphia researchers develop new RNA sequencing platform for diagnosing rare diseases

RNA sequencing using targeted long-read approaches enables detection of disease-causing variants by revealing how genetic changes disrupt full-length RNA molecules...

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journals.plos.org /3 weeks ago

AIEdit: Alignment-free genome assembly polisher trained on spaced seed match patterns

by Parham Kazemi, Ivana Sánchez Olivares, René L. Warren, Lauren Coombe, Inanc Birol Polishing, the process of correcting base-level errors in genome assemblies, is a critical ste...

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rna-seqblog.com /1 week ago

HELIX – a scalable model for predicting context-dependent regulation of RNA splicing and isoform usage

RNA sequencing combined with deep learning enabled HELIX to predict tissue-specific splicing patterns, transcript isoforms, and patient-specific splicing changes in cancer...

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rna-seqblog.com /3 weeks ago

SCOTCH – isoform-level characterization of gene expression through long-read single-cell RNA sequencing

RNA sequencing with SCOTCH improves isoform-level analysis from long-read single-cell data, helping reveal cell-type-specific transcript diversity and novel RNA isoforms

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rna-seqblog.com /3 weeks ago

Benchmarking nanopore RNA sequencing for m6A detection

RNA sequencing with nanopore technology improves m6A modification mapping when paired with calibrated workflows, helping reveal cell-specific RNA regulation in fibroblasts and neur...

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scotsman.com /3 weeks ago

SNP to fall short of overall majority at Holyrood election, poll finds

The Norstat survey for The Sunday Times suggested the Nationalists would secure 57 MSPs

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rna-seqblog.com /2 days ago

Decima predicts gene expression at single-cell resolution

RNA sequencing from more than 22 million cells trained a model that predicts cell-type-specific gene expression and noncoding variant...

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journals.plos.org /2 days ago

TIPP-SD: A new method for species detection in microbiomes

by Chengze Shen, Eleanor Wedell, Mihai Pop, Tandy Warnow In this study, we present TIPP-SD (i.e., TIPP for Species Detection), a new technique for species detection in a microbiom...

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rna-seqblog.com /1 month ago

PhytoCell – an ensemble learning framework for identifying cell states in plant scRNA-seq data

PhytoCell uses machine learning with RNA sequencing to identify marker genes and classify plant cell subpopulations, improving accuracy in complex single-cell datasets...

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journals.plos.org /1 month ago

ntStat: k-mer characterization using occurrence statistics in raw sequencing data

by Parham Kazemi, Lauren Coombe, René L. Warren, Inanc Birol K-mer counts are fundamental in many genomic data analysis tasks, providing valuable information for genome assembly,...

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scotsman.com /1 month ago

SNP urges Anas Sarwar to back its jobs plan at Grangemouth

Scottish Labour accused the Nationalists of ‘shameless opportunism and empty promises’

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rna-seqblog.com /1 week ago

miND standardizes small RNA sequencing analysis for biomarker discovery

RNA sequencing with the miND pipeline supports standardized small RNA analysis for biomarker discovery across tissues, plasma, extracellular vesicles, and other sample types...

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rna-seqblog.com /1 month ago

CHOP researchers develop versatile and low-cost technology for targeted long-read RNA sequencing

Long-read RNA sequencing improves rare disease diagnosis by resolving transcript isoforms and variant effects, enabling more accurate interpretation of pathogenic splicing...

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bbc.com /3 weeks ago

SNP wins Scottish election as Reform and Labour tie for second

John Swinney's party finished comfortably ahead of its rivals, but short of an overall majority.

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journals.plos.org /1 month ago

QoALa: A comprehensive workflow for viral quasispecies diversity comparison using long-read sequencing data

by Nakarin Pamornchainavakul, Declan C. Schroeder, Kimberly VanderWaal The concept of viral quasispecies refers to a constantly mutating viral population occurring within hosts, w...

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scotsman.com /1 month ago

SNP three short of majority with Reform in second, poll finds

The SNP is set to win 62 MSPs, with Reform on 19 and Labour on 17.

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rna-seqblog.com /1 month ago

Alida Biosciences launches EpiPlex® Tri-Mod™ service for simultaneous profiling of three key mRNA modifications

RNA sequencing now enables simultaneous detection of multiple RNA modifications alongside gene expression, providing deeper...

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Sources covering Snp Calling

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journals.plos.org

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rna-seqblog.com

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scotsman.com

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