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journals.plos.org /1 month ago

PanDelos-plus: A parallel algorithm for computing sequence homology in pangenomic analysis

by Simone Colli, Emiliano Maresi, Vincenzo Bonnici The identification of homologous gene families across multiple genomes is a central task in bacterial pangenomics traditionally...

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journals.plos.org /1 week ago

DipSkmer: Reference-free population genomics with diploid genome skims

by Eduardo Charvel, Homère J. Alves Monteiro, Siavash Mirarab, Vineet Bafna Ecologists and conservation biologists rely on genetic diversity as a key essential biodiversity variab...

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rna-seqblog.com /2 weeks ago

Tracing 700 million years of cell evolution

RNA sequencing combined with AI helps Unify compare cell types across distant species by identifying shared biological functions even when individual genes no longer directly...

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journals.plos.org /4 weeks ago

Structural Variant benchmarking frameworks: Parameterization, matching logic, and evaluation assumptions presented throu...

by Gamze Maden, Mehmet Baysan, Nizamettin AydÄ±n Structural Variants (SVs) constitute a significant yet complicated class of genomic changes. Due to their imprecise breakpoints, v...

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bioengineer.org /1 month ago

MHC class II beta genes analyzed in captive king penguin colony

In a finding that is already making waves among conservation geneticists and penguin enthusiasts alike, researchers in Japan have decoded the immune-system genes of one of the worl...

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genengnews.com /1 week ago

Multiomics in 2026 and Beyond

Multiomics analysis combines data from two or more omics layers—such as genomics, transcriptomics, proteomics, and epigenomics. However, published criticisms of multiomics approach...

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blog.google /1 month ago

AlphaGenome Atlas: a high-resolution map of human DNA

We’re introducing AlphaGenome Atlas, a database predicting the effects of every possible single nucleotide variant in the human genome.

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journals.plos.org /1 month ago

The 100 Diatom Genomes Project

by Thomas Mock, Gust Bilcke, Eliott Flaum, Shunan Fu, Lilian Hoch, Kevin Moog, Nadine Rijsdijk, Elizabeth C. Ruck, Ian W. Bishop, Carole Duchene, Reuben Gilbertson, Amanda Hopes, C...

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bioengineer.org /4 weeks ago

Genomes of Drug-Resistant Poultry E. coli Reveal Global Genetic Connections

Antimicrobial resistance has become one of the defining health threats of the twenty-first century, and few organisms embody the problem as completely as Escherichia coli. A new co...

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journals.plos.org /1 month ago

The highly heterozygous European amphioxus (<i>Branchiostoma lanceolatum</i>) at the edge of panmixia

by Marina Brasó-Vives, Diego A. Hartasánchez, Angélica Pulido, Stéphanie Bertrand, Hector Escriva, Marc Robinson-Rechavi Amphioxus (Cephalochordata) are small marine chordates tha...

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journals.plos.org /1 month ago

Balanced DNA interpolation improves learning of genetic distance-informed embeddings in plants

by Lara M. Kösters, Kevin Karbstein, Ladislav Hodač, Laura Albreht, Elvira Sahuquillo Balbuena, Daniel Botello, Olivier Hardy, Phebian Odufuwa, Eva Pardo Otero, Aireen Phang, Manue...

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phys.org /1 month ago

AI tool compares 125 cell types across 700 million years of evolution

A KAUST-led team has developed the AI tool Unify to help scientists compare similar cell types across distant species. This comparison can help researchers assess which findings fr...

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arstechnica.com /1 month ago

Google's AI genome system evaluates every possible one-base change

Most one-base changes to the human genome do nothing, but a few are significant.

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fightaging.org /1 month ago

Genome Sequencing of Bat Species in Search of Causes of Longevity

Long-lived bats are extreme outliers in the normal mammalian relationships between species body size, metabolic rate, and life span. They are small, have a high metabolic rate, and...

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