Latest updates for Cibersort

Fresh curated links around CIBERSORT are collected here so marketers can spot useful updates and turn timely ideas into posts faster.

Recent items include:

  • Computational deconvolution of drug sensitivity via single-cell–to–bulk transcriptome mapping
  • iDCF: Interpretable deconvolution of cell fractions via biologically-informed deep learning using scRNA-seq data
  • New computational tool maps the cell-state crosstalk that decides survival in IDH-mutant glioma

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journals.plos.org /1 week ago

Computational deconvolution of drug sensitivity via single-cell–to–bulk transcriptome mapping

by Alexandre Coudray, Romain Forey, Benjamin Bejar Haro, Filipe Martins, Joana Carlevaro-Fita, Shaoline Sheppard, Sandra Eloise Offner, Gioele La Manno, Guillaume Obozinski, Didier...

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journals.plos.org /1 month ago

iDCF: Interpretable deconvolution of cell fractions via biologically-informed deep learning using scRNA-seq data

by Hongjiang Guo, Tingfang Wu, Wenzheng Wang, Yelu Jiang, Geng Li, Liangpeng Nie, Yunhua Jia, Lijun Quan, Moli Huang, Qiang Lyu Precise resolution of cellular heterogeneity within...

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bioengineer.org /3 weeks ago

New computational tool maps the cell-state crosstalk that decides survival in IDH-mutant glioma

A team at the National Cancer Institute has unveiled a computational framework that turns ordinary bulk tumor RNA-sequencing data into a map of the conversations between cell state...

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rna-seqblog.com /3 weeks ago

DeOPUS improves cell-type estimates from bulk RNA sequencing

RNA sequencing combined with DeOPUS helps estimate cell-type proportions from bulk tissue samples, offering a computational alternative to more complex single-cell analysis...

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rna-seqblog.com /1 week ago

GARAGE improves rare cell detection in single-cell RNA sequencing analysis using AI

GARAGE uses artificial intelligence to generate realistic single-cell RNA sequencing data, improving rare cell representation, gene selection and cell clustering in complex biologi...

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journals.plos.org /2 weeks ago

DeCTCF: Decoding CTCF binding sequences by leveraging predicted epigenomic features

by Lu Chai, Jie Gao, Tinghe Guo, Teer Ba, Zihan Li, Junjie Liu, Yong Wang, Lirong Zhang CTCF is a key architectural protein with diverse roles in genome organization and gene regu...

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journals.plos.org /2 weeks ago

Spatial Transcriptomics As Rasterized Image Tensors (STARIT) characterizes cell states with subcellular molecular hetero...

by Dee Velazquez, Caleb Hallinan, Roujin An, Kalen Clifton, Jean Fan Imaging-based spatially resolved transcriptomics (imSRT) technologies provide high-throughput molecular-resolu...

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rna-seqblog.com /2 weeks ago

CellART extracts single-cell information from high-resolution spatial transcriptomics

RNA sequencing references combined with CellART help identify individual cells and cell types within high-resolution spatial transcriptomics data across multiple...

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rna-seqblog.com /1 month ago

CellTypeAI – cell annotation for scRNA-seq using local generative-AI

CellTypeAI combines local generative AI with biological context to improve cell annotation accuracy in single-cell RNA sequencing while helping researchers keep sensitive data priv...

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nanowerk.com /1 month ago

A Google-like search engine for single-cell RNA

Scientists have built a search engine that can scan data from millions of single cells from thousands of experiments worldwide in seconds. The tool makes it possible to answer prev...

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Sources covering Cibersort

bioengineer.org

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journals.plos.org

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nanowerk.com

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rna-seqblog.com

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